You can disable the Basic pay option so that it will not automatically recur each time you run the pay run. To do this go to Chart of Setup from the Employer / Setup drop down menu and click the Basic Pay Recurring Setup link under the Payrun Customisation section. From the Basic Pay recurring drop down, select “No” and click the Save button to save the changes you have made.
Road Map - Basic Pay Recurring Setup
Employer/Setup -> Chart of Setup -> Payrun Customisation -> Basic Pay Recurring Setup Link -> Basic Pay Recurring Select 'NO' -> Save button
( 'Employer/Setup' is the button positioned in the tasking zone menu at the top. It is the first button from the left)